Cummings (2009) The repertoire of glycan determinants in the human glycome

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Cummings RD. The repertoire of glycan determinants in the human glycome. Mol Biosyst. 2009 5(10):1087-104. doi:10.1039/b907931a. PMID: 19756298.


Motifs

Accession Name(s) Aglycon Reducing-End? Alignment
GGM.000001
Type 2 LN, N-acetyllactosamine
R false Substructure
GGM.000002
Type 2 LN2, i antigen
R false Substructure
GGM.000003
I antigen
R false Substructure
GGM.000004
i antigen
R false Substructure
GGM.000005
Type 1 LN
R false Substructure
GGM.000006
Type 1 LN2
R false Substructure
GGM.000007
Type 1 LN3
R false Substructure
GGM.000008
Tn antigen
Ser/Thr true Whole-Glycan
GGM.000009
T antigen, TF antigen
Ser/Thr true Whole-Glycan
GGM.000010
H antigen (type 3)
Ser/Thr true Whole-Glycan
GGM.000011
A antigen (type 3)
Ser/Thr true Whole-Glycan
GGM.000012
Sialyl Tn antigen
Ser/Thr true Whole-Glycan
GGM.000013
Sialyl T antigen
Ser/Thr true Whole-Glycan
GGM.000014
Di-sialyl T antigen
Ser/Thr true Whole-Glycan
GGM.000015
a-Gal antigen, alpha-Gal antigen
R false Substructure
GGM.000016
LacdiNAc, LDN
R false Substructure
GGM.000017
Fucosylated LDN, LDNF
R false Substructure
GGM.000018
Lewis x, Lex, SSEA-1, Le^x
R false Substructure
GGM.000019
Lewis y, Ley, Le^y
R false Substructure
GGM.000020
Lewis a, Lea, Le^a
R false Substructure
GGM.000021
Lewis b, Leb, Le^b
R false Substructure
GGM.000022
Sialyl Lewis x, Slex, SLex, SLe^x
R false Nonreducing-End
GGM.000024
Sialyl Lewis a, Slea, CA19-9 antigen, SLea, SLe^a
R false Nonreducing-End
GGM.000025
6'-Sulfo Sialyl Lewis x, 6'-sulfo SLex, 6'-Sulfo-sialyl Lewis x, 6'-sulfo SLe^x
R false Nonreducing-End
GGM.000026
2,6-sialyl-Sulfo-LN, 6-sialyl-6-sulfo LN
R false Nonreducing-End
GGM.000027
6-sulfo SLex, 6-Sulfo Sialyl Lewis x, 6-Sulfo-sialyl Lewis x, 6-sulfo SLe^x
R false Nonreducing-End
GGM.000028
6,6'-bisSulfo-Lewis x, 6,6'-Disulfo Sialyl Lewis x, 6,6'-bissulfo Lex, 6,6'-bissulfo Le^x
R false Nonreducing-End
GGM.000029
3'-Sulfo Lewis x, 3'-sulfo Lex, 3'-Sulfo-Lewis x, 3'-sulfo Le^x
R false Substructure
GGM.000030
3'-Sulfo Lewis a, 3'-Sulfo Lea, 3'-Sulfo-Lewis a, 3'-Sulfo Le^a
R false Substructure
GGM.000031
Lex-Lex, Le^x-Le^x
R false Substructure
GGM.000032
SDLex, SDLe^x
R false Nonreducing-End
GGM.000033
VIM-2
R false Nonreducing-End
GGM.000034
3-Sialyl-LN (type 2)
R false Nonreducing-End
GGM.000035
6-Sialyl-GalNAc, 6-Sialyl LN (type 1), 6-Sialyl LN (type 2)
R false Nonreducing-End
GGM.000036
Blood group H (type 2)
R false Substructure
GGM.000037
Blood group B (type 2)
R false Substructure
GGM.000038
Blood group A (type 2)
R false Substructure
GGM.000039
A-Ley, A-Le^y, Blood group A (type 2) - Lewis y
R false Substructure
GGM.000040
Blood group A1 (type 3)
R false Substructure
GGM.000041
Blood group A2 (A-associated H type 3)
R false Substructure
GGM.000042
Blood group H (type 1)
R false Substructure
GGM.000043
Blood group B (type 1)
R false Substructure
GGM.000044
Blood group A (type 1)
R false Substructure
GGM.000045
Blood group H (type 2) - Lewis y, H-Ley, H-Le^y
R false Substructure
GGM.000046
B-Leb, B-Le^b, Blood group B (type 1) - Lewis b
R false Substructure
GGM.000047
A-Leb, A-Le^b, Blood group A (type 1) - Lewis b
R false Substructure
GGM.000049
4'-sulfated LDN
R false Substructure
GGM.000050
Sialylated LDN
R false Nonreducing-End
GGM.000051
Sda/CT antigen, Sd^a/CT antigen
R false Substructure
GGM.000053
SLex Core 2 O-glycan, SLe^x Core 2 O-glycan
Ser/Thr true Core
GGM.000054
Diphosphorylated Man6, Diphosphorylated Man_6
R false Substructure
GGM.000055
O-Linked mannose
Ser/Thr true Whole-Glycan
GGM.000056
2,6-Branched O-mannose
Ser/Thr true Whole-Glycan
GGM.000057
O-Mannose Lex, O-Mannose Le^x
Ser/Thr true Core
GGM.000058
HNK-1 antigen
R false Nonreducing-End
GGM.000059
HNK-1 on O-mannose
Ser/Thr true Whole-Glycan
GGM.000060
Glucosylceramide
Cer true Whole-Glycan
GGM.000061
Galactosylceramide
Cer true Whole-Glycan
GGM.000062
Seminolipid
Other true Whole-Glycan
GGM.000063
Sulfatide
Cer true Whole-Glycan
GGM.000064
Lactosylceramide
Cer true Whole-Glycan
GGM.000065
Ceramide dihexosyl sulfate
Cer true Whole-Glycan
GGM.000066
Monosulfated gangliotetraosylceramide
Cer true Whole-Glycan
GGM.000067
Lactotriaosylceramide, Lc3, Lc_3
Cer true Whole-Glycan
GGM.000068
Pk antigen, Gb3, globotriaosylceramide, P^k antigen, Gb_3
Cer true Whole-Glycan
GGM.000069
P1 antigen
Cer true Whole-Glycan
GGM.000070
Globoside, P antigen, Gb4, Cytolipin K, Globoside I, Globotetraosylceramide
Cer true Whole-Glycan
GGM.000071
Isoglobotetraosylceramide
Cer true Whole-Glycan
GGM.000072
Mono-sulfated globopentaosylceramide
Cer true Whole-Glycan
GGM.000073
Mono-sulfated globotetraosylceramide
Cer true Whole-Glycan
GGM.000074
Sulfo-isogloboside, Mono-sulfated isoglobotetraosylceramide
Cer true Whole-Glycan
GGM.000075
LcGg4
Cer true Whole-Glycan
GGM.000076
Gb5, Globopentaosylceramide
Cer true Whole-Glycan
GGM.000077
Paragloboside
Cer true Whole-Glycan
GGM.000078
GL-6 fucosylated, globoH
Cer true Whole-Glycan
GGM.000079
SSEA-3
Cer true Whole-Glycan
GGM.000080
GL-7 globoseries ganglioside, SSEA-4
Cer true Whole-Glycan
GGM.000081
Sialosyl paragloboside
Cer true Whole-Glycan
GGM.000082
Disialosyl globopentaosylceramide
Cer true Whole-Glycan
GGM.000083
Cytolipin R
Cer true Whole-Glycan
GGM.000084
Forssman glycolipid, Globopentosylceramide, Forssman antigen
Cer true Whole-Glycan
GGM.000085
para-Forssman glycolipid
Cer true Whole-Glycan
GGM.000086
Blood group H (type 4)
Cer true Whole-Glycan
GGM.000087
Blood group B (type 4)
Cer true Whole-Glycan
GGM.000088
Blood group A (type 4)
Cer true Whole-Glycan
GGM.000089
GM4
Cer true Whole-Glycan
GGM.000090
GM3
Cer true Whole-Glycan
GGM.000091
GD3
Cer true Whole-Glycan
GGM.000092
GT3
Cer true Whole-Glycan
GGM.000093
9-O-Acetyl GD3
Cer true Whole-Glycan
GGM.000094
GD2
Cer true Whole-Glycan
GGM.000095
GM2
Cer true Whole-Glycan
GGM.000096
N-Glycolyl-GM2
Cer true Whole-Glycan
GGM.000097
Sialopentaosylceramide
Cer true Whole-Glycan
GGM.000098
GM1
Cer true Whole-Glycan
GGM.000099
Asialo-GM1, Gangliotetraosylceramide
Cer true Whole-Glycan
GGM.000100
cisGM1, GM1b
Cer true Whole-Glycan
GGM.000101
2-Fucosyl-GM1
Cer true Whole-Glycan
GGM.000102
B-GM1
Cer true Whole-Glycan
GGM.000103
2-Fucosyl-GD1b
Cer true Whole-Glycan
GGM.000104
B-GD1b
Cer true Whole-Glycan
GGM.000105
GD1, GD1c
Cer true Whole-Glycan
GGM.000106
GD1a, GD1alpha
Cer true Whole-Glycan
GGM.000107
GD1a
Cer true Whole-Glycan
GGM.000108
GD1b
Cer true Whole-Glycan
GGM.000109
GT2
Cer true Whole-Glycan
GGM.000110
GT1a
Cer true Whole-Glycan
GGM.000111
GT1aa, GT1aalpha
Cer true Whole-Glycan
GGM.000112
GT1b
Cer true Whole-Glycan
GGM.000113
GT1c
Cer true Whole-Glycan
GGM.000114
GQ1aa, GQ1aalpha
Cer true Whole-Glycan
GGM.000115
GQ1b
Cer true Whole-Glycan
GGM.000116
GQ1ba, GQ1balpha
Cer true Whole-Glycan
GGM.000117
GQ1c
Cer true Whole-Glycan
GGM.000118
GP1c
Cer true Whole-Glycan
GGM.000119
GP1ca, GP1calpha
Cer true Whole-Glycan
GGM.000120
GH1ca, GH1calpha
Cer true Whole-Glycan
GGM.000121
Mono-fucosyl LN5, Mono-fucosyl LN_5
Cer true Whole-Glycan
GGM.000122
Mono-fucosyl LN3, Mono-fucosyl LN_3
Cer true Whole-Glycan